The transcriptional regulatory repertoire of Corynebacterium(9)
发布时间:2021-06-06
发布时间:2021-06-06
K.Brinkrolfetal./JournalofBiotechnology149 (2010) 173–182
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Brinkrolf,K.,Brune,I.,Tauch,A.,2007.Thetranscriptionalregulatorynetwork
oftheaminoacidproducerCorynebacteriumglutamicum.J.Biotechnol.129,191–211.
Brocker,M.,Schaffer,S.,Mack,C.,Bott,M.,2009.CitrateutilizationbyCorynebac-teriumglutamicumiscontrolledbytheCitABtwo-componentsystemthroughpositiveregulationofthecitratetransportgenescitHandtctCBA.J.Bacteriol.191,3869–3880.
Brune,I.,Brinkrolf,K.,Kalinowski,J.,Pühler,A.,Tauch,A.,2005.Theindividualand
commonrepertoireofDNA-bindingtranscriptionalregulatorsofCorynebac-teriumglutamicum,Corynebacteriumef ciens,CorynebacteriumdiphtheriaeandCorynebacteriumjeikeiumdeducedfromthecompletegenomesequences.BMCGenomics6,86.
Brune,I.,Werner,H.,Hüser,A.T.,Kalinowski,J.,Pühler,A.,Tauch,A.,2006.The
DtxRproteinactingasdualtranscriptionalregulatordirectsaglobalregula-torynetworkinvolvedinironmetabolismofCorynebacteriumglutamicum.BMCGenomics7,21.
Cho,B.K.,Charusanti,P.,Herrgard,M.J.,Palsson,B.O.,2007.Microbialregulatoryand
metabolicnetworks.Curr.Opin.Biotechnol.18,360–364.
Choi,W.W.,Park,S.D.,Lee,S.M.,Kim,H.B.,Kim,Y.,Lee,H.S.,2009.ThewhcAgene
playsanegativeroleinoxidativestressresponseofCorynebacteriumglutamicum.FEMSMicrobiol.Lett.290,32–38.
Collado-Vides,J.,Salgado,H.,Morett,E.,Gama-Castro,S.,Jiménez-Jacinto,V.,
Martínez-Flores,I.,Medina-Rivera,A.,Mu niz-Rascado,L.,Peralta-Gil,M.,Santos-Zavaleta,A.,2009.Bioinformaticsresourcesforthestudyofgeneregulationinbacteria.J.Bacteriol.191,23–31.
Cramer,A.,Gerstmeir,R.,Schaffer,S.,Bott,M.,Eikmanns,B.J.,2006.Identi cationof
RamA,anovelLuxR-typetranscriptionalregulatorofgenesinvolvedinacetatemetabolismofCorynebacteriumglutamicum.J.Bacteriol.188,2554–2567.
denHengst,C.D.,Buttner,M.J.,2008.Redoxcontrolinactinobacteria.Biochim.Bio-phys.Acta1780,1201–1216.
Dobrin,R.,Beg,Q.K.,Barabasi,A.L.,Oltvai,Z.N.,2004.Aggregationoftopological
motifsintheEscherichiacolitranscriptionalregulatorynetwork.BMCBioinfor-matics5,10.
Droege,M.,Hill,B.,2008.TheGenomeSequencerFLXSystem—longerreads,more
applications,straightforwardbioinformaticsandmorecompletedatasets.J.Biotechnol.136,3–10.
Ehira,S.,Shirai,T.,Teramoto,H.,Inui,M.,Yukawa,H.,2008.Group2sigmafactorSigB
ofCorynebacteriumglutamicumpositivelyregulatesglucosemetabolismunderconditionsofoxygendeprivation.Appl.Environ.Microbiol.74,5146–5152.Ehira,S.,Ogino,H.,Teramoto,H.,Inui,M.,Yukawa,H.,2009a.Regulationof
quinoneoxidoreductasebytheredox-sensingtranscriptionalregulatorQorRinCorynebacteriumglutamicum.J.Biol.Chem.284,16736–16742.
Ehira,S.,Teramoto,H.,Inui,M.,Yukawa,H.,2009b.RegulationofCorynebacterium
glutamicumheatshockresponsebytheextracytoplasmic-functionsigmafactorSigHandtranscriptionalregulatorsHspRandHrcA.J.Bacteriol.191,2964–2972.Engels,V.,Lindner,S.N.,Wendisch,V.F.,2008.TheglobalrepressorSugRcontrols
expressionofgenesofglycolysisandofthel-lactatedehydrogenaseLdhAinCorynebacteriumglutamicum.J.Bacteriol.190,8033–8044.
Faith,J.J.,Hayete,B.,Thaden,J.T.,Mogno,I.,Wierzbowski,J.,Cottarel,G.,Kasif,S.,
Collins,J.J.,Gardner,T.S.,rge-scalemappingandvalidationofEscherichiacolitranscriptionalregulationfromacompendiumofexpressionpro les.PLoSBiol.5,e8.
Freyre-González,J.A.,Alonso-Pavón,J.A.,Trevi no-Quintanilla,L.G.,Collado-Vides,
J.,2008.FunctionalarchitectureofEscherichiacoli:newinsightsprovidedbyanaturaldecompositionapproach.GenomeBiol.9,R154.
Frunzke,J.,Engels,V.,Hasenbein,S.,Gatgens,C.,Bott,M.,2008.Co-ordinatedregula-tionofgluconatecatabolismandglucoseuptakeinCorynebacteriumglutamicumbytwofunctionallyequivalenttranscriptionalregulators,GntR1andGntR2.Mol.Microbiol.67,305–322.
Gama-Castro,S.,Jiménez-Jacinto,V.,Peralta-Gil,M.,Santos-Zavaleta,A.,Pe naloza-Spinola,M.I.,Contreras-Moreira,B.,Segura-Salazar,J.,Mu niz-Rascado,L.,
Martínez-Flores,I.,Salgado,H.,Bonavides-Martínez,C.,Abreu-Goodger,C.,Rodríguez-Penagos,C.,Miranda-Ríos,J.,Morett,E.,Merino,E.,Huerta,A.M.,Trevi no-Quintanilla,L.,Collado-Vides,J.,2008.RegulonDB(version6.0):generegulationmodelofEscherichiacoliK-12beyondtranscription,active(experi-mental)annotatedpromotersandTextpressonavigation.NucleicAcidsRes.36,D120–124.
Gao,B.,Paramanathan,R.,Gupta,R.S.,2006.Signatureproteinsthataredistinctive
characteristicsofActinobacteriaandtheirsubgroups.AntonieVanLeeuwenhoek90,69–91.
Garg,S.K.,SuhailAlam,M.,Soni,V.,RadhaKishan,K.V.,Agrawal,P.,2007.Charac-terizationofMycobacteriumtuberculosisWhiB1/Rv3219asaproteindisul dereductase.ProteinExpr.Purif.52,422–432.
Gualerzi,C.O.,Giuliodori,A.M.,Pon,C.L.,2003.Transcriptionalandpost-transcriptionalcontrolofcold-shockgenes.J.Mol.Biol.331,527–539.
Hayashi,M.,Mizoguchi,H.,Ohnishi,J.,Mitsuhashi,S.,Yonetani,Y.,Hashimoto,
S.,Ikeda,M.,2006a.AleuCmutationleadingtoincreasedl-lysineproductionandrel-independentglobalexpressionchangesinCorynebacteriumglutamicum.Appl.Microbiol.Biotechnol.72,783–789.
Hayashi,M.,Ohnishi,J.,Mitsuhashi,S.,Yonetani,Y.,Hashimoto,S.,Ikeda,M.,2006b.
Transcriptomeanalysisrevealsglobalexpressionchangesinanindustriall-lysineproducerofCorynebacteriumglutamicum.Biosci.Biotechnol.Biochem.70,546–550.
Hobl,B.,Mack,M.,2007.TheregulatorproteinPyrRofBacillussubtilisspeci cally
interactsinvivowiththreeuntranslatedregionswithinpyrmRNAofpyrimidinebiosynthesis.Microbiology153,693–700.
Huang,N.,DeIngeniis,J.,Galeazzi,L.,Mancini,C.,Korostelev,Y.D.,Rakhmani-nova,A.B.,Gelfand,M.S.,Rodionov,D.A.,Raffaelli,N.,Zhang,H.,2009.StructureandfunctionofanADP-ribose-dependenttranscriptionalregulatorofNADmetabolism.Structure17,939–951.
Ikeda,M.,Ohnishi,J.,Hayashi,M.,Mitsuhashi,S.,2006.Agenome-basedapproach
tocreateaminimallymutatedCorynebacteriumglutamicumstrainforef cientl-lysineproduction.J.Ind.Microbiol.Biotechnol.33,610–615.
Jochmann,N.,Kurze,A.K.,Czaja,L.F.,Brinkrolf,K.,Brune,I.,Hüser,A.T.,Hansmeier,
N.,Pühler,A.,Borovok,I.,Tauch,A.,2009.GeneticmakeupoftheCorynebac-teriumglutamicumLexAregulondeducedfromcomparativetranscriptomicsandinvitroDNAbandshiftassays.Microbiology155,1459–1477.
Kalinowski,J.,Bathe,B.,Bartels,D.,Bischoff,N.,Bott,M.,Burkovski,A.,Dusch,N.,
Eggeling,L.,Eikmanns,B.J.,Gaigalat,L.,Goesmann,A.,Hartmann,M.,Huth-macher,K.,Kramer,R.,Linke,B.,McHardy,A.C.,Meyer,F.,Mockel,B.,Pfefferle,W.,Pühler,A.,Rey,D.A.,Rückert,C.,Rupp,O.,Sahm,H.,Wendisch,V.F.,Wiegräbe,I.,Tauch,A.,2003.ThecompleteCorynebacteriumglutamicumATCC13032genomesequenceanditsimpactontheproductionofl-aspartate-derivedaminoacidsandvitamins.J.Biotechnol.104,5–25.
Kim,T.H.,Park,J.S.,Kim,H.J.,Kim,Y.,Kim,P.,Lee,H.S.,2005.ThewhcEgeneof
mun.337,757–764.
Kim,W.S.,Park,S.D.,Lee,S.M.,Kim,Y.,Kim,P.,Lee,H.S.,2007.Expressionanalysis
ofthecsp-likegenesfromCorynebacteriumglutamicumencodinghomologsoftheEscherichiacolimajorcold-shockproteinCspA.J.Microbiol.Biotechnol.17,1353–1360.
Kimura,E.,2003.Metabolicengineeringofglutamateproduction.Adv.Biochem.
Eng.Biotechnol.79,37–57.
Kjeldsen,K.R.,Nielsen,J.,2009.Insilicogenome-scalereconstructionandvalidation
oftheCorynebacteriumglutamicummetabolicnetwork.Biotechnol.Bioeng.102,583–597.Koˇcan,M.,Schaffer,S.,Ishige,T.,Sorger-Herrmann,U.,Wendisch,V.F.,Bott,M.,2006.
Two-componentsystemsofCorynebacteriumglutamicum:deletionanalysisandinvolvementofthePhoS-PhoRsysteminthephosphatestarvationresponse.J.Bacteriol.188,724–732.
Kohl,T.A.,Tauch,A.,2009.TheGlxRregulonoftheaminoacidproducer
Corynebacteriumglutamicum:detectionofthecorynebacterialcoreregulonandintegrationintothetranscriptionalregulatorynetworkmodel.J.Biotechnol.143,239–246.
Kohl,T.A.,Baumbach,J.,Jungwirth,B.,Pühler,A.,Tauch,A.,2008.TheGlxRregulon
oftheaminoacidproducerCorynebacteriumglutamicum:insilicoandinvitrodetectionofDNAbindingsitesofaglobaltranscriptionregulator.J.Biotechnol.135,340–350.
Larisch,C.,Nakunst,D.,Hüser,A.T.,Tauch,A.,Kalinowski,J.,2007.Thealterna-tivesigmafactorSigBofCorynebacteriumglutamicummodulatesglobalgeneexpressionduringtransitionfromexponentialgrowthtostationaryphase.BMCGenomics8,4.
Lee,H.H.,Chung,S.S.,Jo,J.H.,2006.ExpressionofpyrHgeneencodingUMP-kinase
isregulatedbydirectbindingofPyrRtothepromoterinCorynebacteriumglu-tamicum.Genet.Ind.Microorganism10,91.
Lemmens,K.,DeBie,T.,Dhollander,T.,Monsieurs,P.,DeMoor,B.,Collado-Vides,J.,
Engelen,K.,Marchal,K.,2009.Thecondition-dependenttranscriptionalnetworkinEscherichiacoli.Ann.N.Y.Acad.Sci.1158,29–35.
Lozada-Chávez,I.,Janga,S.C.,Collado-Vides,J.,2006.Bacterialregulatorynet-worksareextremely exibleinevolution.NucleicAcidsRes.34,3434–3445.
Ma,H.W.,Buer,J.,Zeng,A.P.,2004.Hierarchicalstructureandmodulesinthe
Escherichiacolitranscriptionalregulatorynetworkrevealedbyanewtop-downapproach.BMCBioinformatics5,199.
MadanBabu,M.,Teichmann,S.A.,2003.Functionaldeterminantsoftranscription
factorsinEscherichiacoli:proteinfamiliesandbindingsites.TrendsGenet.19,75–79.
MadanBabu,M.,Luscombe,N.M.,Aravind,L.,Gerstein,M.,Teichmann,S.A.,2004.
Structureandevolutionoftranscriptionalregulatorynetworks.Curr.Opin.Struct.Biol.14,283–291.
Maeda,Y.T.,Sano,M.,2006.Regulatorydynamicsofsyntheticgenenetworkswith
positivefeedback.J.Mol.Biol.359,1107–1124.
Mitsuhashi,S.,Hayashi,M.,Ohnishi,J.,Ikeda,M.,2006.Disruptionofmalate:quinone
oxidoreductaseincreasesl-lysineproductionbyCorynebacteriumglutamicum.Biosci.Biotechnol.Biochem.70,2803–2806.
Möker,N.,Brocker,M.,Schaffer,S.,Krämer,R.,Morbach,S.,Bott,M.,2004.Deletionof
thegenesencodingtheMtrA-MtrBtwo-componentsystemofCorynebacteriumglutamicumhasastrongin uenceoncellmorphology,antibioticssusceptibil-ityandexpressionofgenesinvolvedinosmoprotection.Mol.Microbiol.54,420–438.
Moreno-Campuzano,S.,Janga,S.C.,Pérez-Rueda,E.,2006.Identi cationandanalysis
ofDNA-bindingtranscriptionfactorsinBacillussubtilisandotherFirmicutes—agenomicapproach.BMCGenomics7,147.
Muhl,D.,Jeszberger,N.,Hasselt,K.,Jardin,C.,Sticht,H.,Burkovski,A.,2009.DNA
bindingbyCorynebacteriumglutamicumTetR-typetranscriptionregulatorAmtR.BMCMol.Biol.10,73.
Niebisch,A.,Kabus,A.,Schultz,C.,Weil,B.,Bott,M.,2006.Corynebacterialprotein
kinaseGcontrols2-oxoglutaratedehydrogenaseactivityviathephosphoryla-tionstatusoftheOdhIprotein.J.Biol.Chem.281,12300–12307.
Nishimura,T.,Teramoto,H.,Vertes,A.A.,Inui,M.,Yukawa,H.,2008.ArnR,a
noveltranscriptionalregulator,repressesexpressionofthenarKGHJIoperoninCorynebacteriumglutamicum.J.Bacteriol.190,3264–3273.
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