vmd教程 forces-tutorial

CONTENTS4Requiredprograms

Thefollowingprogramsarerequiredforthistutorial:

VMD:Availableathttp://www.ks.uiuc.edu/Research/vmd

NAMD:Availableathttp://www.ks.uiuc.edu/Research/namd

GettingStarted

Youcan ndthe lesforthistutorialintheforces-tutorial-filesdirectory.Fig.1showsthe lesanddirectoriesofforces-tutorial-files.

tclForcesFilescommonexample-outputpush

rot-a

rot-b

rot-c

BUBBLE

BUBBLE_OUTPUT_EXAMPLE

IONS

IONS_OUTPUT_EXAMPLE

SHEAR

SHEAR_OUTPUT_EXAMPLE

example-output

push-grid

graphene

ions-gridforces-tutorial-filestclBCfilestclBCmoviesgridForceFiles

Figure1:Directorystructureofforces-tutorial- les

TostartVMDtypevmdinaUnixterminalwindow,double-clickontheVMDapplicationiconintheApplicationsfolderinMacOSX,orclickontheStart→Programs→VMDmenuiteminWindows.